About

Research & curiosity

I am a fifth-year Ph.D. student at the University of Waterloo, Department of Applied Mathematics under the supervision of Professor Jun Liu. My research interests span Diffusion Models, Control Theory, and Partial Differential Equations.

I earned my Bachelor’s Degree in Applied Mathematics with Scientific Computing and a Minor in Statistics from the University of Waterloo in 2022.

A little more about me

Some fun facts about me. Prior to my undergraduate degree, I was born in Japan and lived there for 18 years. I am also learning Mandarin in my spare time (I would say I’m somewhere between HSK2 and 3).

Aside from doing math, you will often see me playing board games or enjoying an order of bubble tea.

Highlights

Recent work

3 papers accepted to IEEE CDC 2026: Score-based Outlier Generation via Controlling the Radon-Nikodym Derivative, Almost Sure Convergence Analysis of Stochastic Gradient Methods with Clipping and Additive Noise, Learning Lyapunov Operators for Nonlinear Systems. See you in Hawaii!

Awarded the Waterloo.AI Physical AI Graduate Scholarship supported by the Philantra Foundation to advance the deployment of neural networks with rigorous error certification in robotics. Read more ↗

Presenting Manifold-Guided Stabilization with Diffusion Models at the American Control Conference. Paper ↗

Joining RBC Borealis as an intern, working on diffusion models for temporal point process forecasting

Publications

Papers & preprints
13 papers

Almost Sure Convergence Analysis of Stochastic Gradient Methods with Clipping and Additive Noise

Amartya Mukherjee and Jun Liu

Score-based Outlier Generation via Controlling the Radon-Nikodym Derivative

Amartya Mukherjee, Tristan Milne, Kry Yik-Chau Lui, Stephanie Hazlewood, Jun Liu

Learning Lyapunov Operators for Nonlinear Systems

Amartya Mukherjee, Maxwell Fitzsimmons, David C. Del Rey Fernández, Jun Liu

ADiff4TPP: Asynchronous Diffusion Models for Temporal Point Processes

Amartya Mukherjee, Ruizhi Deng, He Zhao, Yuzhen Mao, Leonid Sigal, Frederick Tung

Rigorous Error Certification for Neural PDE Solvers: From Empirical Residuals to Solution Guarantees

Amartya Mukherjee, Maxwell Fitzsimmons, David C. Del Rey Fernández, Jun Liu

Manifold-Guided Stabilization of Nonlinear Dynamical Systems with Diffusion Models

Amartya Mukherjee, Thanin Quartz, Jun Liu

Physics-Informed Neural Network Policy Iteration: Algorithms, Convergence, and Verification

Yiming Meng, Ruikun Zhou, Amartya Mukherjee, Maxwell Fitzsimmons, Christopher Song, Jun Liu

Denoising Diffusion Restoration Tackles Forward and Inverse Problems for the Laplace Operator

Amartya Mukherjee, Melissa M Stadt, Lena Podina, Mohammad Kohandel, Jun Liu

Enhancing Reinforcement Learning in Vision-Based Environments with Optical Flow

Amartya Mukherjee and Jun Liu

Harmonic Control Lyapunov Barrier Functions for Constrained Optimal Control with Reach-Avoid Specifications

Amartya Mukherjee, Ruikun Zhou, Haocheng Chang, Jun Liu

Actor-Critic Methods using Physics-Informed Neural Networks: Control of a 1D PDE Model for Fluid-Cooled Battery Packs

Amartya Mukherjee and Jun Liu

Bridging Physics-Informed Neural Networks with Reinforcement Learning: Hamilton-Jacobi-Bellman Proximal Policy Optimization (HJBPPO)

Amartya Mukherjee and Jun Liu

Stochastic Parameterization Using Compressed Sensing: Application to the Lorenz-96 Atmospheric Model

Amartya Mukherjee, Yusuf Aydogdu, Thambirajah Ravichandran, Navaratnam Sri Namachchivaya

Patents

Invention

Methods and Devices for Extracting Motion Vector Data from Compressed Video Data

Sheral Sweta KUMAR, Amartya MUKHERJEE, Seel Nimeshkumar PATEL, Rui XIANG CHAI, Wentao Liu, Yuanhao Yu, Yang Wang, Jin Tang

Experience

Research in practice

MITACS Machine Learning Research Intern

Developed a likelihood-space control method for diffusion models that generates rare and tail-event scenarios without retraining or finetuning the underlying model. Derived theoretical guarantees for the controlled sampling procedure; Research published in IEEE CDC 2026. Publication

Machine Learning Research Intern

Advanced the application of diffusion models for prediction in irregularly sampled time series under the presence of mixed data types and variable sequence length; Research published in TMLR. Publication

Computer Vision Researcher

Implemented a pipeline for motion vector extraction in smartphones, intended for accelerated video AI tasks. Patent

Talks & conversations

Sharing ideas

Reinforcement Learning: Zero to ChatGPT

I have given this talk for a Machine Learning seminar hosted by the Department of Applied Mathematics, University of Waterloo. This talk gives an introduction to reinforcement learning, proximal policy optimization (PPO), and reinforcement learning with human feedback (RLHF) used to train large language models (LLMs) such as ChatGPT.

You can find the slides here.

Greg n Arsh podcast

I have been featured in a podcast with our wonderful Greg Hogg and Arsheya Jain! We had an interesting discussion about my journey into the data science and research world, and my life before that.

Link to podcast: https://www.youtube.com/watch?v=c1kM9s6_ggk

Teaching

University of Waterloo

MATH 237 Online

Calculus 3 for Honors Mathematics · University of Waterloo

Teaching assistantships

Winter 2025

  • AMATH 449/649 / CS 479/679 - Neural Networks
  • MATH 117 - Calculus 1 for Engineering

Winter 2026

  • AMATH 495/900 - Mathematics of Deep Learning

Winter 2025

  • AMATH 495/900 - Mathematics of Climate Change
  • MATH 237 - Calculus 3 for Honors Mathematics

Winter 2024

  • MATH 118 - Calculus 2 for Engineering
  • MATH 104 - Introductory Calculus for Arts and Social Science

Fall 2023

  • AMATH 731 - Applied Functional Analysis
  • MATH 116 - Calculus 1 for Engineering

Spring 2023

  • AMATH 242 / CS 371 - Introduction to Computational Mathematics

Winter 2023

  • AMATH 242 / CS 371 - Introduction to Computational Mathematics

Fall 2022

  • MATH 117 - Calculus 1 for Engineering
  • MATH 137 - Calculus 1 for Honors Mathematics

Beyond the research

Notes & travels

Hawaii / ICML 2023

View the photo journal

My posters

posters

View from the airplane

airplane

View outside my AirBnB

AirBnB

Fishes in the pond

pond

View from diamond head

diamond_head_fr

View of diamond head

diamond_head

Chickens!

chickens

View from North Shore

north_shore

Ube cake

ube_cake

McDonald’s breakfast

mcds

Acai bowl

acai

Sushi

sushi